Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm26927-201ENSMUST00000182385 965 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm45930-201ENSMUST00000221330 292 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm10076-201ENSMUST00000073238 384 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm10268-201ENSMUST00000085340 555 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm6091-201ENSMUST00000098307 165 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm43242-201ENSMUST00000199507 1776 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm42141-201ENSMUST00000196534 2172 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm17244-201ENSMUST00000192482 3416 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim40Q3UWA4 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm18782-201ENSMUST00000209023 1399 ntBASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm7029-201ENSMUST00000173226 450 ntBASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm44405-201ENSMUST00000198952 126 ntBASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm22058-201ENSMUST00000083393 310 ntBASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim40Q3UWA4 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 85.8 ms