Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm25063-201ENSMUST00000104666 94 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm26134-201ENSMUST00000178484 110 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Mir8093-201ENSMUST00000185043 137 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm5298-201ENSMUST00000201122 892 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Mir6407-201ENSMUST00000184510 101 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm9139-201ENSMUST00000218817 700 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 AC134869.4-202ENSMUST00000224350 837 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm23105-201ENSMUST00000083719 134 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Paupar-201ENSMUST00000194826 3482 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3aQ3ULJ3 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm14219-201ENSMUST00000120414 288 ntBASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm45120-201ENSMUST00000208880 408 ntBASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms