Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm43172-201ENSMUST00000202139 2137 ntBASIC13.96□□□□□ -0.18
Col3a1P08121 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Col3a1P08121 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col3a1P08121 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.18
Col3a1P08121 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.96□□□□□ -0.18
Col3a1P08121 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col3a1P08121 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
Col3a1P08121 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Matn2-203ENSMUST00000226766 3252 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm45743-201ENSMUST00000212701 2795 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm25063-201ENSMUST00000104666 94 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
Col3a1P08121 Gm11422-201ENSMUST00000118925 1103 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm12990-201ENSMUST00000120372 468 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm12791-201ENSMUST00000120788 655 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm17889-201ENSMUST00000198410 598 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm3726-201ENSMUST00000203110 785 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm44552-201ENSMUST00000205458 1247 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC13.95□□□□□ -0.18
Col3a1P08121 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Gm6653-201ENSMUST00000218063 1288 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm9139-201ENSMUST00000218817 700 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm5468-202ENSMUST00000227851 682 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 n-R5s211-201ENSMUST00000093689 119 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Gm8325-201ENSMUST00000099086 453 ntBASIC13.95□□□□□ -0.18
Col3a1P08121 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Col3a1P08121 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.95□□□□□ -0.18
Col3a1P08121 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Col3a1P08121 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.95□□□□□ -0.18
Col3a1P08121 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Col3a1P08121 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col3a1P08121 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col3a1P08121 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 AC165351.1-201ENSMUST00000219078 2020 ntBASIC13.94□□□□□ -0.18
Col3a1P08121 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Col3a1P08121 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC13.94□□□□□ -0.18
Col3a1P08121 Gm45856-201ENSMUST00000212752 416 ntBASIC13.94□□□□□ -0.18
Col3a1P08121 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Col3a1P08121 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Col3a1P08121 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Col3a1P08121 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Col3a1P08121 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 AC158636.1-201ENSMUST00000220118 1393 ntBASIC13.94□□□□□ -0.18
Col3a1P08121 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Gm38194-201ENSMUST00000194529 2211 ntBASIC13.94□□□□□ -0.18
Col3a1P08121 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Col3a1P08121 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Gm29100-201ENSMUST00000187564 4410 ntBASIC13.94□□□□□ -0.18
Col3a1P08121 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col3a1P08121 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Col3a1P08121 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Gm18294-201ENSMUST00000176980 1748 ntBASIC13.93□□□□□ -0.18
Col3a1P08121 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Col3a1P08121 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Col3a1P08121 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC13.93□□□□□ -0.18
Col3a1P08121 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC13.93□□□□□ -0.18
Col3a1P08121 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Gm9884-201ENSMUST00000194343 1222 ntBASIC13.93□□□□□ -0.18
Col3a1P08121 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC13.93□□□□□ -0.18
Col3a1P08121 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Gm45410-201ENSMUST00000211331 1093 ntBASIC13.93□□□□□ -0.18
Col3a1P08121 AC134248.1-201ENSMUST00000216113 1176 ntBASIC13.93□□□□□ -0.18
Col3a1P08121 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Gm16380-201ENSMUST00000077997 478 ntBASIC13.93□□□□□ -0.18
Col3a1P08121 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col3a1P08121 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 154.8 ms