Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hmgb3O54879 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hmgb3O54879 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hmgb3O54879 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC9.75□□□□□ -0.85
Hmgb3O54879 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC9.75□□□□□ -0.85
Hmgb3O54879 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hmgb3O54879 Ank1-215ENSMUST00000173248 7100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hmgb3O54879 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Tardbp-202ENSMUST00000084125 7477 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Cacna1c-206ENSMUST00000185345 6579 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Fam210a-201ENSMUST00000042852 9651 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Srgap1-202ENSMUST00000081688 7787 ntAPPRIS P3 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm11637-201ENSMUST00000120601 592 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm12363-201ENSMUST00000122250 668 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm8810-201ENSMUST00000172895 754 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC9.74□□□□□ -0.85
Hmgb3O54879 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm32025-201ENSMUST00000217960 307 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Hmgb3O54879 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm6189-201ENSMUST00000164487 2082 ntBASIC9.74□□□□□ -0.85
Hmgb3O54879 Wdfy4-202ENSMUST00000130509 10158 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Sox6-201ENSMUST00000072804 8227 ntAPPRIS P4 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Traf3-201ENSMUST00000021706 7060 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Nrap-205ENSMUST00000167239 4752 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hmgb3O54879 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Gria1-202ENSMUST00000094179 5399 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hmgb3O54879 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Firre-206ENSMUST00000203933 5555 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 195.4 ms