Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Trem1Q9JKE2 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm10531-201ENSMUST00000193527 2303 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Cacna2d4-201ENSMUST00000037434 5803 ntAPPRIS P3 TSL 2 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 AC154527.2-201ENSMUST00000225256 1466 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 D030055H07Rik-202ENSMUST00000150953 4325 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Stau1-202ENSMUST00000109235 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Stpg2-201ENSMUST00000062306 2818 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm16202-201ENSMUST00000117532 544 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm44064-201ENSMUST00000204964 1087 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm8420-201ENSMUST00000097103 598 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Car12-201ENSMUST00000071889 3716 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Aqp7-202ENSMUST00000054945 2154 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gramd1b-202ENSMUST00000118159 2781 ntTSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Ano2-204ENSMUST00000160496 3925 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm4454-201ENSMUST00000190585 2578 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Gm10699-201ENSMUST00000098916 2130 ntBASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trem1Q9JKE2 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Ilf3-213ENSMUST00000216892 3684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Rbm10-204ENSMUST00000115374 3564 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Fes-201ENSMUST00000080932 2762 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Bpifb9a-201ENSMUST00000088924 2065 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Rhobtb1-201ENSMUST00000020101 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trem1Q9JKE2 Gm44069-201ENSMUST00000204898 506 ntBASIC10.56□□□□□ -0.72
Trem1Q9JKE2 AC173210.1-201ENSMUST00000222341 1131 ntBASIC10.56□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms