Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim54Q9ERP3 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm22920-201ENSMUST00000102175 109 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm11949-201ENSMUST00000117640 372 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm11246-201ENSMUST00000120880 345 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Mir8115-201ENSMUST00000184992 119 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm27910-201ENSMUST00000185004 107 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm29499-201ENSMUST00000189151 486 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm28329-201ENSMUST00000191208 689 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm29171-201ENSMUST00000191397 486 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm38117-201ENSMUST00000194653 939 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm43186-201ENSMUST00000198130 824 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm10752-201ENSMUST00000218348 729 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 AC129219.2-201ENSMUST00000224324 701 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Adra1a-206ENSMUST00000225182 2337 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim54Q9ERP3 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trim54Q9ERP3 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trim54Q9ERP3 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Trim54Q9ERP3 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.83□□□□□ -0.35
Trim54Q9ERP3 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm23771-201ENSMUST00000178702 110 ntBASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm45219-201ENSMUST00000205602 465 ntBASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim54Q9ERP3 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Gm6903-201ENSMUST00000160509 1366 ntBASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim54Q9ERP3 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 224.8 ms