Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lima1Q9ERG0 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lima1Q9ERG0 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.69□□□□□ -0.54
Lima1Q9ERG0 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lima1Q9ERG0 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lima1Q9ERG0 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm6203-201ENSMUST00000209575 1342 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm6560-201ENSMUST00000198588 1591 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm12742-201ENSMUST00000117326 410 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm11793-201ENSMUST00000120433 981 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm13786-201ENSMUST00000122371 333 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm27023-201ENSMUST00000182372 285 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm37201-201ENSMUST00000191845 523 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm42627-201ENSMUST00000197347 224 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 AC153962.4-201ENSMUST00000217878 242 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm5186-201ENSMUST00000218781 920 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 AC166095.1-201ENSMUST00000223731 1241 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 CU024892.2-201ENSMUST00000224608 832 ntBASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lima1Q9ERG0 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Btrc-209ENSMUST00000224478 2194 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm14999-201ENSMUST00000121039 624 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm2673-201ENSMUST00000120958 1608 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm9466-201ENSMUST00000218144 2246 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC11.67□□□□□ -0.54
Lima1Q9ERG0 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Gm18262-201ENSMUST00000222560 1946 ntBASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 AC124577.2-201ENSMUST00000217413 2420 ntBASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lima1Q9ERG0 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms