Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cln3Q61124 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cln3Q61124 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Cln3Q61124 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cln3Q61124 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cln3Q61124 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm13600-201ENSMUST00000117949 744 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Gm13117-201ENSMUST00000120894 691 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC12.97□□□□□ -0.33
Cln3Q61124 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm29013-201ENSMUST00000187431 237 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Gm43084-201ENSMUST00000200696 947 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Gm5298-201ENSMUST00000201122 892 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.97□□□□□ -0.33
Cln3Q61124 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm30671-201ENSMUST00000214898 318 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Lgi3-203ENSMUST00000226548 1001 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 AC154757.2-201ENSMUST00000228885 743 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Gm4978-201ENSMUST00000071565 801 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Cln3Q61124 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Mir483-201ENSMUST00000093631 73 ntBASIC12.97□□□□□ -0.33
Cln3Q61124 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Cln3Q61124 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cln3Q61124 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm37648-201ENSMUST00000192072 2563 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Cln3Q61124 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
Cln3Q61124 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Cln3Q61124 Ica1-202ENSMUST00000115518 1256 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Defa-ps4-201ENSMUST00000118021 183 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Gm11422-201ENSMUST00000118925 1103 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.96□□□□□ -0.33
Cln3Q61124 Esp36-201ENSMUST00000172814 1117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.96□□□□□ -0.33
Cln3Q61124 Esp36-202ENSMUST00000177882 1117 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm7741-201ENSMUST00000181445 989 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Gm21147-201ENSMUST00000186046 913 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm36982-201ENSMUST00000193796 1128 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.96□□□□□ -0.33
Cln3Q61124 Ap3s1-202ENSMUST00000224622 978 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Cln3Q61124 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Gm16380-201ENSMUST00000077997 478 ntBASIC12.96□□□□□ -0.33
Cln3Q61124 Gm5169-201ENSMUST00000096469 768 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cln3Q61124 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Cln3Q61124 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cln3Q61124 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Cln3Q61124 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cln3Q61124 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cln3Q61124 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.96□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms