Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm3287-205ENSMUST00000228893 1332 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC10.92□□□□□ -0.66
Cops4O88544 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm2606-201ENSMUST00000100754 1002 ntBASIC10.92□□□□□ -0.66
Cops4O88544 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC10.92□□□□□ -0.66
Cops4O88544 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 Gm12286-201ENSMUST00000119246 1002 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Gm18584-201ENSMUST00000203098 964 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC10.92□□□□□ -0.66
Cops4O88544 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC10.92□□□□□ -0.66
Cops4O88544 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 Dhrs4-202ENSMUST00000226168 828 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm22058-201ENSMUST00000083393 310 ntBASIC10.92□□□□□ -0.66
Cops4O88544 AC154314.2-201ENSMUST00000223677 3502 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Cops4O88544 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm8706-201ENSMUST00000197372 1491 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC10.92□□□□□ -0.66
Cops4O88544 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Cops4O88544 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cops4O88544 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Cops4O88544 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Gm8793-201ENSMUST00000183069 1303 ntBASIC10.91□□□□□ -0.66
Cops4O88544 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC10.91□□□□□ -0.66
Cops4O88544 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC10.91□□□□□ -0.66
Cops4O88544 Gm4935-201ENSMUST00000221316 1198 ntBASIC10.91□□□□□ -0.66
Cops4O88544 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Gm7789-202ENSMUST00000211273 1400 ntBASIC10.91□□□□□ -0.66
Cops4O88544 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Cops4O88544 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Cops4O88544 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cops4O88544 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Gm12846-201ENSMUST00000120431 1373 ntBASIC10.9□□□□□ -0.66
Cops4O88544 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC10.9□□□□□ -0.66
Cops4O88544 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
Cops4O88544 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cops4O88544 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 74.9 ms