Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gm18062-201ENSMUST00000208020 547 ntBASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Gm18055-201ENSMUST00000208254 547 ntBASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Gm9996-201ENSMUST00000070359 913 ntBASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 AC126257.1-201ENSMUST00000213195 1536 ntBASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Pcdh1F7BJK1 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm37969-201ENSMUST00000195777 3409 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm5419-201ENSMUST00000119301 527 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Trav4d-2-201ENSMUST00000120914 335 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm14832-201ENSMUST00000121289 322 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm5370-201ENSMUST00000187187 574 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Pcdh1F7BJK1 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm4366-201ENSMUST00000201488 1342 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 AC124577.2-201ENSMUST00000217413 2420 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm21939-201ENSMUST00000221137 2773 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm11700-201ENSMUST00000119409 403 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm24845-201ENSMUST00000158034 109 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm18893-201ENSMUST00000198416 943 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm9004-201ENSMUST00000218739 1222 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms