Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm5171-201ENSMUST00000214944 1415 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm15617-201ENSMUST00000118973 771 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm43380-201ENSMUST00000200421 220 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm8436-201ENSMUST00000210152 1080 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm5749-201ENSMUST00000210673 1090 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm16380-201ENSMUST00000077997 478 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm44056-201ENSMUST00000204623 1427 ntBASIC13.84□□□□□ -0.19
Scn11aQ9R053 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm10169-201ENSMUST00000121822 348 ntBASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm6548-201ENSMUST00000167498 1165 ntBASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm19587-201ENSMUST00000191395 545 ntBASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm35960-201ENSMUST00000202712 767 ntBASIC13.84□□□□□ -0.19
Scn11aQ9R053 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm5805-201ENSMUST00000072779 456 ntBASIC13.84□□□□□ -0.19
Scn11aQ9R053 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Sertm1-202ENSMUST00000162201 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Scn11aQ9R053 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm14807-201ENSMUST00000116640 983 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm12179-201ENSMUST00000118344 1272 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm23675-201ENSMUST00000157311 125 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm37852-201ENSMUST00000193027 350 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 AC134248.1-201ENSMUST00000216113 1176 ntBASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Scn11aQ9R053 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
Scn11aQ9R053 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Gm3836-201ENSMUST00000211377 1613 ntBASIC13.83□□□□□ -0.2
Scn11aQ9R053 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Scn11aQ9R053 Gm6831-202ENSMUST00000213025 1673 ntBASIC13.83□□□□□ -0.2
Scn11aQ9R053 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC13.83□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms