Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Mir1943-201ENSMUST00000158276 73 ntBASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Gm8146-201ENSMUST00000192106 1847 ntBASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ube3bQ9ES34 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm45199-201ENSMUST00000207640 1507 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm5380-201ENSMUST00000119296 2136 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm14263-201ENSMUST00000117955 746 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm15352-201ENSMUST00000118696 270 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm24844-201ENSMUST00000158679 127 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm9550-201ENSMUST00000161130 862 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm8459-201ENSMUST00000162504 760 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm5523-201ENSMUST00000180415 997 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 AC154680.1-201ENSMUST00000224376 859 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm21998-201ENSMUST00000117552 1308 ntBASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm29644-201ENSMUST00000189003 1341 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ube3bQ9ES34 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm11956-201ENSMUST00000119525 512 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm3150-201ENSMUST00000166418 204 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm12407-201ENSMUST00000180219 324 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm43037-201ENSMUST00000196808 250 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm17831-201ENSMUST00000205579 900 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm4797-201ENSMUST00000219075 1283 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 AC166344.1-201ENSMUST00000223745 674 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Gm43760-201ENSMUST00000202120 3015 ntBASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ube3bQ9ES34 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms