Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Gm26901-204ENSMUST00000193732 631 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Gm45745-201ENSMUST00000211447 1180 ntBASIC15.74■□□□□ 0.11
Scn4aQ9ER60 CU025215.1-201ENSMUST00000222986 603 ntBASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Hat1-201ENSMUST00000028408 1576 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn4aQ9ER60 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Sh2d1a-203ENSMUST00000115070 782 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm13002-201ENSMUST00000119286 682 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm14650-201ENSMUST00000120400 889 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm16480-201ENSMUST00000120439 832 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Epp13-201ENSMUST00000121024 957 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm14524-201ENSMUST00000121066 683 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Olfml3-204ENSMUST00000169286 874 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm17107-201ENSMUST00000170983 553 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 AC151836.1-201ENSMUST00000228730 1637 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Plac9b-201ENSMUST00000100809 388 ntTSL 2 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Rfc4-203ENSMUST00000115338 1279 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm6276-201ENSMUST00000120159 579 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Xbp1-204ENSMUST00000149623 897 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm16280-201ENSMUST00000162458 623 ntTSL 3 BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm24466-201ENSMUST00000179978 109 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Gm18862-201ENSMUST00000204643 933 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 AC161374.2-201ENSMUST00000223662 596 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Zfp389-202ENSMUST00000224437 1234 ntBASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Scn4aQ9ER60 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC15.72■□□□□ 0.11
Scn4aQ9ER60 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Cyp2j15-ps-201ENSMUST00000122267 686 ntBASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gm13817-201ENSMUST00000142249 604 ntTSL 3 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Tcl1-203ENSMUST00000175652 535 ntTSL 2 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Tspy-ps-203ENSMUST00000186546 989 ntBASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gm4753-201ENSMUST00000188327 1255 ntBASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gm40153-201ENSMUST00000197904 637 ntTSL 3 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gm43103-201ENSMUST00000199021 802 ntBASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gm43851-201ENSMUST00000200726 327 ntTSL 3 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 AC107711.3-201ENSMUST00000228939 1035 ntBASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Krtap3-2-201ENSMUST00000092699 1031 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms