Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm27627-201ENSMUST00000183644 150 ntBASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gm17827-201ENSMUST00000211825 742 ntBASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Ddx56Q9D0R4 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm14130-201ENSMUST00000118417 987 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm29615-201ENSMUST00000185371 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28224-201ENSMUST00000186078 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm29001-201ENSMUST00000186177 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28292-201ENSMUST00000186593 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28101-201ENSMUST00000187608 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm29076-201ENSMUST00000187689 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28302-201ENSMUST00000187931 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28646-201ENSMUST00000188220 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28205-201ENSMUST00000189177 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm29032-201ENSMUST00000189797 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm28695-201ENSMUST00000190300 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm37448-201ENSMUST00000192795 697 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Nrf1-206ENSMUST00000115204 2047 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx56Q9D0R4 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Ddx56Q9D0R4 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx56Q9D0R4 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx56Q9D0R4 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.46□□□□□ -0.41
Ddx56Q9D0R4 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.46□□□□□ -0.41
Ddx56Q9D0R4 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms