Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm37861-201ENSMUST00000193534 2869 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm13117-201ENSMUST00000120894 691 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 Gm10169-201ENSMUST00000121822 348 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm6450-201ENSMUST00000200896 574 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 Gm45113-201ENSMUST00000207518 165 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 AC168279.1-201ENSMUST00000214611 382 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Usf1Q61069 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Usf1Q61069 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Usf1Q61069 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Usf1Q61069 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm26684-202ENSMUST00000228229 8257 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm15615-201ENSMUST00000118876 198 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm22146-201ENSMUST00000157397 288 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm3726-201ENSMUST00000203110 785 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm18460-201ENSMUST00000208088 464 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Gm17931-201ENSMUST00000208132 634 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Gm18204-201ENSMUST00000209835 793 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Mt1-202ENSMUST00000211807 1085 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Usf1Q61069 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm42748-201ENSMUST00000199354 2341 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Usf1Q61069 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Usf1Q61069 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm43334-201ENSMUST00000197740 1318 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Usf1Q61069 Gm10176-201ENSMUST00000159707 2264 ntBASIC10.81□□□□□ -0.68
Usf1Q61069 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Usf1Q61069 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Usf1Q61069 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Usf1Q61069 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Usf1Q61069 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC10.8□□□□□ -0.68
Usf1Q61069 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Usf1Q61069 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Usf1Q61069 Gm44260-201ENSMUST00000204946 2094 ntBASIC10.8□□□□□ -0.68
Usf1Q61069 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Usf1Q61069 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms