Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm12138-201ENSMUST00000122180 951 ntBASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm29649-201ENSMUST00000185649 419 ntBASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim40Q3UWA4 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Gm44799-201ENSMUST00000207639 1202 ntBASIC11.1□□□□□ -0.63
Trim40Q3UWA4 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim40Q3UWA4 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim40Q3UWA4 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms