Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 AC153929.1-201ENSMUST00000219009 303 ntBASIC11.54□□□□□ -0.56
Col28a1Q2UY11 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm3890-201ENSMUST00000182416 207 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm9136-201ENSMUST00000193368 454 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm21769-201ENSMUST00000211922 111 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 AC022775.2-201ENSMUST00000227885 646 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Col28a1Q2UY11 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 AC211878.3-201ENSMUST00000222629 2018 ntBASIC11.52□□□□□ -0.56
Col28a1Q2UY11 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Col28a1Q2UY11 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC11.52□□□□□ -0.57
Col28a1Q2UY11 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Gm5363-201ENSMUST00000211927 938 ntBASIC11.52□□□□□ -0.57
Col28a1Q2UY11 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 215.6 ms