Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.14□□□□□ -0.31
Col6a1Q04857 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col6a1Q04857 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col6a1Q04857 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.13□□□□□ -0.31
Col6a1Q04857 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Gm7537-201ENSMUST00000221660 1414 ntBASIC13.13□□□□□ -0.31
Col6a1Q04857 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Gm16166-201ENSMUST00000118291 787 ntBASIC13.13□□□□□ -0.31
Col6a1Q04857 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Gm29410-201ENSMUST00000188383 694 ntBASIC13.13□□□□□ -0.31
Col6a1Q04857 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC13.13□□□□□ -0.31
Col6a1Q04857 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Gm18059-201ENSMUST00000208073 580 ntBASIC13.13□□□□□ -0.31
Col6a1Q04857 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 AC124433.1-201ENSMUST00000224483 1063 ntBASIC13.13□□□□□ -0.31
Col6a1Q04857 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Col6a1Q04857 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col6a1Q04857 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm6903-201ENSMUST00000160509 1366 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Mir671-201ENSMUST00000102432 98 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm25063-201ENSMUST00000104666 94 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm12579-201ENSMUST00000118040 783 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm15036-201ENSMUST00000118880 400 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm11836-201ENSMUST00000121022 441 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm5257-201ENSMUST00000121823 790 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm15744-201ENSMUST00000161734 213 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm38228-201ENSMUST00000193169 1293 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm18204-201ENSMUST00000209835 793 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Ap3s1-202ENSMUST00000224622 978 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm5705-201ENSMUST00000066241 711 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Gm8894-201ENSMUST00000074642 666 ntBASIC13.12□□□□□ -0.31
Col6a1Q04857 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms