Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm5385-201ENSMUST00000118988 1559 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm27196-201ENSMUST00000184787 2582 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 AC173482.6-201ENSMUST00000225889 1741 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm8731-201ENSMUST00000118088 412 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm11422-201ENSMUST00000118925 1103 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm12030-201ENSMUST00000121917 223 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm3551-201ENSMUST00000190750 664 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm37458-201ENSMUST00000194055 410 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC10.16□□□□□ -0.78
Col8a1Q00780 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm3017-201ENSMUST00000203603 1126 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm44421-201ENSMUST00000205064 1221 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm44711-201ENSMUST00000205414 1264 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm45410-201ENSMUST00000211331 1093 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC10.16□□□□□ -0.78
Col8a1Q00780 AC121960.1-201ENSMUST00000227982 564 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 AC136376.2-201ENSMUST00000228819 490 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm45053-201ENSMUST00000206112 2499 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm5380-201ENSMUST00000119296 2136 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Col8a1Q00780 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm42480-201ENSMUST00000198434 2595 ntBASIC10.16□□□□□ -0.78
Col8a1Q00780 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col8a1Q00780 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm44401-201ENSMUST00000204462 2375 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm12218-201ENSMUST00000117666 399 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm5909-201ENSMUST00000119768 1281 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Ighv2-1-201ENSMUST00000170946 353 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC10.15□□□□□ -0.78
Col8a1Q00780 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm44270-201ENSMUST00000203084 1234 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm43930-201ENSMUST00000203868 845 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Col8a1Q00780 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC10.15□□□□□ -0.78
Col8a1Q00780 AC122350.1-201ENSMUST00000228135 533 ntBASIC10.15□□□□□ -0.78
Col8a1Q00780 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms