Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Col18a1P39061 AC138329.2-201ENSMUST00000225579 1842 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Gm43242-201ENSMUST00000199507 1776 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Gm5822-201ENSMUST00000161562 1378 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Gm14005-209ENSMUST00000224993 1832 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Gm14176-201ENSMUST00000121302 477 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 AA623943-201ENSMUST00000121794 354 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Tsc22d1-207ENSMUST00000140251 670 ntTSL 2 BASIC15.34■□□□□ 0.05
Col18a1P39061 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 CT030035.1-201ENSMUST00000223964 935 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Fibp-205ENSMUST00000225141 1209 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col18a1P39061 Lect2-202ENSMUST00000225183 823 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Gm9701-201ENSMUST00000077976 427 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Mir341-201ENSMUST00000093593 96 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col18a1P39061 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC15.33■□□□□ 0.05
Col18a1P39061 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col18a1P39061 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Col18a1P39061 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col18a1P39061 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col18a1P39061 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col18a1P39061 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Gm6238-201ENSMUST00000120999 465 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Gm15373-201ENSMUST00000121495 214 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Glrx2-206ENSMUST00000145969 924 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Mir6934-201ENSMUST00000183965 62 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Mrip-ps-201ENSMUST00000184613 940 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Mir124-2hg-203ENSMUST00000186923 673 ntTSL 3 BASIC15.33■□□□□ 0.04
Col18a1P39061 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC15.33■□□□□ 0.04
Col18a1P39061 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC15.33■□□□□ 0.04
Col18a1P39061 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Mt1-203ENSMUST00000212291 633 ntTSL 2 BASIC15.33■□□□□ 0.04
Col18a1P39061 AC133517.1-201ENSMUST00000225825 594 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Speer4f1-201ENSMUST00000076099 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Gm8094-201ENSMUST00000165136 1408 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col18a1P39061 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Gm5053-201ENSMUST00000208361 1678 ntBASIC15.33■□□□□ 0.04
Col18a1P39061 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col18a1P39061 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Gm37122-201ENSMUST00000195313 1567 ntBASIC15.32■□□□□ 0.04
Col18a1P39061 Ccna1-204ENSMUST00000198320 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC15.32■□□□□ 0.04
Col18a1P39061 Gm42687-201ENSMUST00000199075 164 ntBASIC15.32■□□□□ 0.04
Col18a1P39061 Ndufa4-205ENSMUST00000204978 610 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 AC241616.1-201ENSMUST00000213741 166 ntBASIC15.32■□□□□ 0.04
Col18a1P39061 Gm26861-207ENSMUST00000223253 1095 ntTSL 5 BASIC15.32■□□□□ 0.04
Col18a1P39061 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Mrgpra1-201ENSMUST00000098438 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC15.32■□□□□ 0.04
Col18a1P39061 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col18a1P39061 Ms4a6b-201ENSMUST00000025580 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC15.32■□□□□ 0.04
Col18a1P39061 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col18a1P39061 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms