Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm28424-201ENSMUST00000187393 1319 ntBASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm24398-201ENSMUST00000157870 109 ntBASIC13.87□□□□□ -0.19
Scn11aQ9R053 Olfml3-204ENSMUST00000169286 874 ntBASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm45410-201ENSMUST00000211331 1093 ntBASIC13.87□□□□□ -0.19
Scn11aQ9R053 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm44573-201ENSMUST00000191753 2370 ntBASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Scn11aQ9R053 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm17192-201ENSMUST00000169031 511 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm44323-201ENSMUST00000198689 129 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Trav11n-201ENSMUST00000200113 343 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm6855-201ENSMUST00000206307 790 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm42913-201ENSMUST00000197936 1853 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm12791-201ENSMUST00000120788 655 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm12453-201ENSMUST00000121981 331 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm29164-201ENSMUST00000185454 1024 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC13.86□□□□□ -0.19
Scn11aQ9R053 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Scn11aQ9R053 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 AC158636.1-201ENSMUST00000220118 1393 ntBASIC13.85□□□□□ -0.19
Scn11aQ9R053 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Scn11aQ9R053 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms