Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm15953-201ENSMUST00000117656 1732 ntBASIC10.62□□□□□ -0.71
Trem1Q9JKE2 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Oas1h-201ENSMUST00000072476 1703 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm14350-201ENSMUST00000116642 640 ntBASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm13616-201ENSMUST00000120600 222 ntBASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm43575-201ENSMUST00000196420 516 ntBASIC10.62□□□□□ -0.71
Trem1Q9JKE2 AC132104.2-201ENSMUST00000215011 266 ntBASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Zfp827-203ENSMUST00000119254 4549 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Epc1-201ENSMUST00000028100 3965 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Dctn1-202ENSMUST00000113907 4205 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm28138-201ENSMUST00000186250 2167 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm29270-201ENSMUST00000188071 2167 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm29392-201ENSMUST00000189429 2167 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm29252-201ENSMUST00000189869 2167 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm29305-201ENSMUST00000191054 2167 ntTSL 5 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 C1rb-201ENSMUST00000184647 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trem1Q9JKE2 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Ilf3-208ENSMUST00000214758 3177 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Galnt16-206ENSMUST00000219993 4222 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gp1ba-202ENSMUST00000108551 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Papln-201ENSMUST00000021646 4260 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm6736-201ENSMUST00000166583 948 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm9061-201ENSMUST00000182707 1006 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm27989-201ENSMUST00000184721 107 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm38223-201ENSMUST00000194484 695 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm7730-201ENSMUST00000212486 454 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 AC155258.1-201ENSMUST00000219303 253 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 AC139382.1-201ENSMUST00000221402 498 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Klhl7-202ENSMUST00000163409 2857 ntTSL 2 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Gm38005-201ENSMUST00000194845 2745 ntBASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Ralgps2-202ENSMUST00000063199 2947 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trem1Q9JKE2 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Gm10425-201ENSMUST00000181085 3364 ntTSL 2 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 AC159621.2-201ENSMUST00000223519 1326 ntBASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Gm37962-201ENSMUST00000195535 2034 ntBASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Thbs3-202ENSMUST00000119084 2993 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Tubgcp5-205ENSMUST00000205796 3448 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trem1Q9JKE2 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms