Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Matn2-203ENSMUST00000226766 3252 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Trim54Q9ERP3 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Trim54Q9ERP3 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Trim54Q9ERP3 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Trim54Q9ERP3 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm13916-201ENSMUST00000117368 628 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm12579-201ENSMUST00000118040 783 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm8815-201ENSMUST00000173809 620 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm43830-201ENSMUST00000198760 1067 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm9463-201ENSMUST00000206707 601 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm17931-201ENSMUST00000208132 634 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim54Q9ERP3 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gm14585-201ENSMUST00000120713 634 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gm45550-201ENSMUST00000209380 946 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 AC140293.1-201ENSMUST00000225626 1247 ntBASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Trim54Q9ERP3 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.87□□□□□ -0.35
Trim54Q9ERP3 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms