Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm23596-201ENSMUST00000104304 132 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm5706-201ENSMUST00000181525 993 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm8343-201ENSMUST00000182705 994 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm18893-201ENSMUST00000198416 943 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 AU022133-201ENSMUST00000200601 873 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm17931-201ENSMUST00000208132 634 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Vps28Q9D1C8 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gm13812-201ENSMUST00000118061 1347 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gm13810-201ENSMUST00000118584 1347 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gm9333-201ENSMUST00000205452 1323 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Mir5120-201ENSMUST00000175020 78 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Gm44136-201ENSMUST00000203819 1106 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Vps28Q9D1C8 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.18□□□□□ -0.46
Vps28Q9D1C8 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms