Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Gm23596-201ENSMUST00000104304 132 ntBASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Gm12997-201ENSMUST00000120207 640 ntBASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Gm14277-201ENSMUST00000121195 360 ntBASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Gm24990-201ENSMUST00000157406 323 ntBASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm15236-201ENSMUST00000117309 379 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm4310-201ENSMUST00000177847 889 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm3332-201ENSMUST00000189337 928 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm18730-201ENSMUST00000218038 343 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm13812-201ENSMUST00000118061 1347 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gm13810-201ENSMUST00000118584 1347 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Brf1Q8CFK2 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Gm14028-201ENSMUST00000117434 479 ntBASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms