Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim28Q62318 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm38194-201ENSMUST00000194529 2211 ntBASIC15.32■□□□□ 0.04
Trim28Q62318 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC15.32■□□□□ 0.04
Trim28Q62318 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm12516-201ENSMUST00000120819 385 ntBASIC15.32■□□□□ 0.04
Trim28Q62318 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC15.32■□□□□ 0.04
Trim28Q62318 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC15.32■□□□□ 0.04
Trim28Q62318 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm7741-201ENSMUST00000181445 989 ntBASIC15.32■□□□□ 0.04
Trim28Q62318 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC15.32■□□□□ 0.04
Trim28Q62318 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm45219-201ENSMUST00000205602 465 ntBASIC15.32■□□□□ 0.04
Trim28Q62318 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC15.32■□□□□ 0.04
Trim28Q62318 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trim28Q62318 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim28Q62318 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim28Q62318 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Gm25148-201ENSMUST00000104611 123 ntBASIC15.31■□□□□ 0.04
Trim28Q62318 Gm13937-201ENSMUST00000121000 988 ntBASIC15.31■□□□□ 0.04
Trim28Q62318 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC15.31■□□□□ 0.04
Trim28Q62318 Gm9358-201ENSMUST00000183067 927 ntBASIC15.31■□□□□ 0.04
Trim28Q62318 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim28Q62318 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Gm42913-201ENSMUST00000197936 1853 ntBASIC15.31■□□□□ 0.04
Trim28Q62318 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim28Q62318 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim28Q62318 Gm7104-201ENSMUST00000179741 2532 ntBASIC15.31■□□□□ 0.04
Trim28Q62318 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Gm15329-201ENSMUST00000121408 155 ntBASIC15.3■□□□□ 0.04
Trim28Q62318 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 n-R5s84-201ENSMUST00000122591 109 ntBASIC15.3■□□□□ 0.04
Trim28Q62318 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim28Q62318 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Trim28Q62318 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Gm7600-201ENSMUST00000209657 785 ntBASIC15.3■□□□□ 0.04
Trim28Q62318 Gm5996-201ENSMUST00000211110 718 ntBASIC15.3■□□□□ 0.04
Trim28Q62318 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC15.3■□□□□ 0.04
Trim28Q62318 Gm9661-201ENSMUST00000221611 1122 ntBASIC15.3■□□□□ 0.04
Trim28Q62318 Lect2-202ENSMUST00000225183 823 ntBASIC15.3■□□□□ 0.04
Trim28Q62318 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim28Q62318 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim28Q62318 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms