Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Usf1Q61069 Olfr584-201ENSMUST00000098210 964 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm14892-201ENSMUST00000117636 267 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Gm12948-201ENSMUST00000119406 682 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC10.83□□□□□ -0.68
Usf1Q61069 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm9136-201ENSMUST00000193368 454 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm19640-201ENSMUST00000214849 464 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Gm5939-201ENSMUST00000119613 2874 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Ntrk2-204ENSMUST00000224259 3049 ntBASIC10.83□□□□□ -0.68
Usf1Q61069 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Usf1Q61069 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Usf1Q61069 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC10.82□□□□□ -0.68
Usf1Q61069 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Zkscan3-207ENSMUST00000223831 2101 ntBASIC10.82□□□□□ -0.68
Usf1Q61069 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Usf1Q61069 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Usf1Q61069 Gm42863-201ENSMUST00000197875 2958 ntBASIC10.82□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms