Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Mir466f-3-201ENSMUST00000104788 94 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm12227-201ENSMUST00000147847 563 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Vmn2r-ps73-201ENSMUST00000173890 1194 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Vmn1r-ps143-201ENSMUST00000176730 604 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Pou1f1-205ENSMUST00000184525 1020 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm9916-201ENSMUST00000192943 1228 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Vmn1r-ps7-201ENSMUST00000202355 928 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 9530003J23Rik-201ENSMUST00000020392 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 5033424D13Rik-201ENSMUST00000221779 648 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm24136-201ENSMUST00000083374 165 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm7171-201ENSMUST00000177413 1349 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Ctsll3-201ENSMUST00000043754 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm42141-201ENSMUST00000196534 2172 ntBASIC12.56□□□□□ -0.4
Rnf40Q3U319 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Hmgn3-203ENSMUST00000185315 1391 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Rnf40Q3U319 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Ifna13-201ENSMUST00000105149 819 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm11858-201ENSMUST00000117935 838 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm16296-201ENSMUST00000159905 325 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm23363-201ENSMUST00000175024 79 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 AC174797.4-201ENSMUST00000225510 347 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Olfr955-201ENSMUST00000073946 945 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Gm8420-201ENSMUST00000097103 598 ntBASIC12.55□□□□□ -0.4
Rnf40Q3U319 Olfr547-201ENSMUST00000098229 936 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms