Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm12314-201ENSMUST00000118104 538 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm12997-201ENSMUST00000120207 640 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm25668-201ENSMUST00000157700 129 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm43963-201ENSMUST00000203466 2488 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.55□□□□□ -0.56
Col28a1Q2UY11 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Mospd4-201ENSMUST00000180618 576 ntBASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm4819-201ENSMUST00000182170 1009 ntBASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm8420-201ENSMUST00000097103 598 ntBASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm42463-201ENSMUST00000198041 4886 ntBASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col28a1Q2UY11 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col28a1Q2UY11 AC155637.1-201ENSMUST00000218560 636 ntBASIC11.54□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms