Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm44414-201ENSMUST00000203660 2109 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Cdx2P43241 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm5422-201ENSMUST00000050717 2721 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC11.28□□□□□ -0.6
Cdx2P43241 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm12816-201ENSMUST00000118069 1212 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm11422-201ENSMUST00000118925 1103 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm11244-201ENSMUST00000121243 237 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm12030-201ENSMUST00000121917 223 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm26134-201ENSMUST00000178484 110 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm35713-201ENSMUST00000210516 199 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Gm45410-201ENSMUST00000211331 1093 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm23105-201ENSMUST00000083719 134 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Gm37644-201ENSMUST00000192190 2270 ntBASIC11.28□□□□□ -0.6
Cdx2P43241 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Cdx2P43241 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx2P43241 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx2P43241 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
Cdx2P43241 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx2P43241 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.27□□□□□ -0.6
Cdx2P43241 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Cdx2P43241 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx2P43241 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx2P43241 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx2P43241 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx2P43241 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.27□□□□□ -0.6
Cdx2P43241 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdx2P43241 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC11.27□□□□□ -0.61
Cdx2P43241 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Cdx2P43241 Gm26047-201ENSMUST00000157308 113 ntBASIC11.27□□□□□ -0.61
Cdx2P43241 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Gm26047-202ENSMUST00000198840 115 ntBASIC11.27□□□□□ -0.61
Cdx2P43241 AC153929.1-201ENSMUST00000219009 303 ntBASIC11.27□□□□□ -0.61
Cdx2P43241 Gm9111-201ENSMUST00000219394 709 ntBASIC11.27□□□□□ -0.61
Cdx2P43241 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Gm5805-201ENSMUST00000072779 456 ntBASIC11.27□□□□□ -0.61
Cdx2P43241 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Cdx2P43241 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx2P43241 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdx2P43241 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Adra1a-206ENSMUST00000225182 2337 ntBASIC11.26□□□□□ -0.61
Cdx2P43241 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms