Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
RaraP11416 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
RaraP11416 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC12.83□□□□□ -0.36
RaraP11416 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
RaraP11416 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.83□□□□□ -0.36
RaraP11416 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.83□□□□□ -0.36
RaraP11416 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.83□□□□□ -0.36
RaraP11416 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Gm5070-201ENSMUST00000177599 862 ntBASIC12.83□□□□□ -0.36
RaraP11416 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.83□□□□□ -0.36
RaraP11416 AY702102-202ENSMUST00000194651 1173 ntBASIC12.83□□□□□ -0.36
RaraP11416 Gm38314-201ENSMUST00000195709 625 ntBASIC12.83□□□□□ -0.36
RaraP11416 Gm18935-201ENSMUST00000212692 664 ntBASIC12.83□□□□□ -0.36
RaraP11416 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RaraP11416 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.83□□□□□ -0.36
RaraP11416 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RaraP11416 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.83□□□□□ -0.36
RaraP11416 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RaraP11416 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RaraP11416 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RaraP11416 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
RaraP11416 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.82□□□□□ -0.36
RaraP11416 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC12.82□□□□□ -0.36
RaraP11416 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 Gm12106-201ENSMUST00000116006 1200 ntBASIC12.82□□□□□ -0.36
RaraP11416 Gm11700-201ENSMUST00000119409 403 ntBASIC12.82□□□□□ -0.36
RaraP11416 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Gm15547-201ENSMUST00000122152 333 ntBASIC12.82□□□□□ -0.36
RaraP11416 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.82□□□□□ -0.36
RaraP11416 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 Gm27501-201ENSMUST00000183599 107 ntBASIC12.82□□□□□ -0.36
RaraP11416 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.82□□□□□ -0.36
RaraP11416 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.82□□□□□ -0.36
RaraP11416 Gm4607-201ENSMUST00000206649 577 ntBASIC12.82□□□□□ -0.36
RaraP11416 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 Gm2594-201ENSMUST00000214774 742 ntBASIC12.82□□□□□ -0.36
RaraP11416 CT025533.2-201ENSMUST00000228715 1248 ntBASIC12.82□□□□□ -0.36
RaraP11416 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.82□□□□□ -0.36
RaraP11416 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
RaraP11416 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
RaraP11416 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.81□□□□□ -0.36
RaraP11416 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.81□□□□□ -0.36
RaraP11416 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 AC167022.1-201ENSMUST00000218647 1458 ntBASIC12.81□□□□□ -0.36
RaraP11416 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
RaraP11416 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Trav4d-2-201ENSMUST00000120914 335 ntBASIC12.81□□□□□ -0.36
RaraP11416 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Gm6963-201ENSMUST00000147879 379 ntBASIC12.81□□□□□ -0.36
RaraP11416 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
RaraP11416 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms