Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm43569-201ENSMUST00000196200 559 ntTSL 3 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm17838-201ENSMUST00000205872 876 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm19208-201ENSMUST00000213861 912 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 AC096628.1-201ENSMUST00000226060 641 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Dhrs4-202ENSMUST00000226168 828 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 AC115784.1-201ENSMUST00000227687 1010 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Olfr1061-201ENSMUST00000099889 942 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Elk3-204ENSMUST00000151153 1336 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Eif3s6-ps4-201ENSMUST00000202873 1388 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm28323-201ENSMUST00000186817 2499 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm4780-202ENSMUST00000215200 2644 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Tfpi-207ENSMUST00000111722 1232 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm9506-201ENSMUST00000118516 320 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Samd13-204ENSMUST00000147113 729 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm27627-201ENSMUST00000183644 150 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Mir7070-201ENSMUST00000183657 86 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 2610001A08Rik-201ENSMUST00000193315 867 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm43731-201ENSMUST00000196150 666 ntTSL 3 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm34701-201ENSMUST00000204213 849 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 Olfr854-202ENSMUST00000212872 939 ntAPPRIS ALT2 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm19994-201ENSMUST00000217086 586 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 AC153974.2-201ENSMUST00000218577 1025 ntBASIC9.48□□□□□ -0.89
Hoxd3P09027 4930407I19Rik-201ENSMUST00000220265 923 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Olfr921-201ENSMUST00000071681 1181 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Olfr834-201ENSMUST00000086492 939 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Olfr1428-202ENSMUST00000208391 1368 ntTSL 3 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
Hoxd3P09027 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hoxd3P09027 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms