Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Vti1aO89116 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm23085-201ENSMUST00000157849 293 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Rprl1-201ENSMUST00000158050 327 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm4034-201ENSMUST00000187674 480 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC12.85□□□□□ -0.35
Vti1aO89116 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vti1aO89116 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.85□□□□□ -0.35
Vti1aO89116 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Vti1aO89116 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm12857-201ENSMUST00000117678 592 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC12.84□□□□□ -0.35
Vti1aO89116 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm8100-201ENSMUST00000182906 988 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Ginm1-202ENSMUST00000065124 300 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Vti1aO89116 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC12.84□□□□□ -0.35
Vti1aO89116 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Vti1aO89116 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vti1aO89116 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms