Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm6114-201ENSMUST00000182472 968 ntBASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Mir6979-201ENSMUST00000183927 56 ntBASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm10288-201ENSMUST00000084614 537 ntBASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.77□□□□□ -0.36
Cpsf3Q9QXK7 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm23251-201ENSMUST00000103773 110 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm24891-201ENSMUST00000104391 136 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm15207-201ENSMUST00000119259 442 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm45575-201ENSMUST00000210283 548 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gm9333-201ENSMUST00000205452 1323 ntBASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Cpsf3Q9QXK7 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Gm13461-201ENSMUST00000120980 662 ntBASIC12.76□□□□□ -0.37
Cpsf3Q9QXK7 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms