Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm5706-201ENSMUST00000181525 993 ntBASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC12.92□□□□□ -0.34
Trim54Q9ERP3 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm7666-201ENSMUST00000146631 819 ntBASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm4310-201ENSMUST00000177847 889 ntBASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm17831-201ENSMUST00000205579 900 ntBASIC12.91□□□□□ -0.34
Trim54Q9ERP3 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim54Q9ERP3 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm15207-201ENSMUST00000119259 442 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm8365-201ENSMUST00000197334 648 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm19287-201ENSMUST00000203190 358 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 AC154290.1-201ENSMUST00000223786 1240 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim54Q9ERP3 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms