Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm43378-201ENSMUST00000199336 582 ntBASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm44831-201ENSMUST00000208469 2989 ntBASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Gm12015-201ENSMUST00000117065 843 ntBASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Gm11331-201ENSMUST00000119764 288 ntBASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Gm25732-201ENSMUST00000175168 60 ntBASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Gm19187-201ENSMUST00000206781 892 ntBASIC11.09□□□□□ -0.63
Cdc40Q9DC48 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdc40Q9DC48 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Cdc40Q9DC48 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Gm18782-201ENSMUST00000209023 1399 ntBASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Gm12176-201ENSMUST00000121420 875 ntBASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdc40Q9DC48 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms