Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm15207-201ENSMUST00000119259 442 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm15573-201ENSMUST00000119487 540 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm14665-201ENSMUST00000122294 557 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Mir7032-201ENSMUST00000185154 79 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm6781-201ENSMUST00000038304 1242 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sf3b1Q99NB9 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm11667-201ENSMUST00000119828 486 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm15566-201ENSMUST00000121130 590 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm22144-201ENSMUST00000157402 102 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm5714-201ENSMUST00000197343 566 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm8285-201ENSMUST00000208293 759 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm4797-201ENSMUST00000219075 1283 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm21998-201ENSMUST00000117552 1308 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sf3b1Q99NB9 Cog3-203ENSMUST00000227473 4197 ntBASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms