Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Gm12419-201ENSMUST00000116649 636 ntBASIC16.72■□□□□ 0.27
Usp47Q8BY87 Gm11949-201ENSMUST00000117640 372 ntBASIC16.72■□□□□ 0.27
Usp47Q8BY87 Gm7150-201ENSMUST00000122032 981 ntBASIC16.72■□□□□ 0.27
Usp47Q8BY87 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC16.72■□□□□ 0.27
Usp47Q8BY87 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Gm21092-201ENSMUST00000178995 955 ntBASIC16.72■□□□□ 0.27
Usp47Q8BY87 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp47Q8BY87 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm38089-201ENSMUST00000193585 1514 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm23045-201ENSMUST00000175041 96 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm4654-201ENSMUST00000183305 982 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm7467-201ENSMUST00000185173 652 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm2517-201ENSMUST00000215651 348 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 Gm18556-201ENSMUST00000219748 1031 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 AC171241.1-201ENSMUST00000228144 1166 ntBASIC16.71■□□□□ 0.27
Usp47Q8BY87 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp47Q8BY87 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Usp47Q8BY87 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Usp47Q8BY87 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
Usp47Q8BY87 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm44999-201ENSMUST00000207456 1493 ntBASIC16.7■□□□□ 0.26
Usp47Q8BY87 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm43172-201ENSMUST00000202139 2137 ntBASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm15725-201ENSMUST00000119947 1090 ntBASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm20495-201ENSMUST00000173902 235 ntBASIC16.7■□□□□ 0.26
Usp47Q8BY87 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp47Q8BY87 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp47Q8BY87 Gm37458-201ENSMUST00000194055 410 ntBASIC16.69■□□□□ 0.26
Usp47Q8BY87 Gm44980-201ENSMUST00000205826 314 ntBASIC16.69■□□□□ 0.26
Usp47Q8BY87 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms