Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Gm18159-201ENSMUST00000174516 1070 ntBASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Gm44158-201ENSMUST00000203881 505 ntBASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Gm9661-201ENSMUST00000221611 1122 ntBASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Gm5451-201ENSMUST00000080545 579 ntBASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Usp40Q8BWR4 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm27194-201ENSMUST00000175753 2936 ntBASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm11244-201ENSMUST00000121243 237 ntBASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm13182-201ENSMUST00000122241 312 ntBASIC16.25■□□□□ 0.19
Usp40Q8BWR4 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm7504-201ENSMUST00000201449 424 ntBASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm44315-201ENSMUST00000203041 219 ntBASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Gm27177-202ENSMUST00000183514 2703 ntBASIC16.25■□□□□ 0.19
Usp40Q8BWR4 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp40Q8BWR4 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gm12795-201ENSMUST00000117594 539 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gm9089-201ENSMUST00000122027 526 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gm4879-201ENSMUST00000122190 1272 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 AC166341.2-201ENSMUST00000220571 120 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 AC164437.3-201ENSMUST00000228323 347 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 AC093022.4-203ENSMUST00000228523 2657 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Cog3-203ENSMUST00000227473 4197 ntBASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Usp40Q8BWR4 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 136.5 ms