Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm28937-201ENSMUST00000185413 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm29400-201ENSMUST00000187208 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm28662-201ENSMUST00000188446 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm28251-201ENSMUST00000188835 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm37318-201ENSMUST00000194325 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm38017-201ENSMUST00000194768 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm37287-201ENSMUST00000195449 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm37793-201ENSMUST00000195548 695 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm2553-201ENSMUST00000215986 605 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm12165-201ENSMUST00000117047 342 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm6335-201ENSMUST00000118081 1194 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm7816-201ENSMUST00000119884 1194 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm15542-201ENSMUST00000121585 1194 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm45113-201ENSMUST00000207518 165 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm7207-201ENSMUST00000211575 1067 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm1821-202ENSMUST00000227415 750 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm6781-201ENSMUST00000038304 1242 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm5537-201ENSMUST00000091117 1252 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Gm42913-201ENSMUST00000197936 1853 ntBASIC14.01□□□□□ -0.17
Trim56Q80VI1 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim56Q80VI1 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm19817-201ENSMUST00000199764 2132 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC14□□□□□ -0.17
Trim56Q80VI1 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm13347-201ENSMUST00000120298 1353 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm24891-201ENSMUST00000104391 136 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm11960-201ENSMUST00000122068 925 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC14□□□□□ -0.17
Trim56Q80VI1 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm6397-201ENSMUST00000161973 1069 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Gm8815-201ENSMUST00000173809 620 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC14□□□□□ -0.17
Trim56Q80VI1 Spcs1-203ENSMUST00000226374 592 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms