Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC10.86□□□□□ -0.67
Usf1Q61069 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Usf1Q61069 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Usf1Q61069 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
Usf1Q61069 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
Usf1Q61069 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm14807-201ENSMUST00000116640 983 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Gm12856-201ENSMUST00000119471 1293 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Gm11783-201ENSMUST00000119549 885 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm12783-201ENSMUST00000121425 397 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 n-R5s84-201ENSMUST00000122591 109 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC10.85□□□□□ -0.67
Usf1Q61069 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm38151-201ENSMUST00000195085 289 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC10.85□□□□□ -0.67
Usf1Q61069 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm45758-201ENSMUST00000212448 1006 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Usf1Q61069 AC140375.1-201ENSMUST00000225421 694 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 AC129308.3-201ENSMUST00000225652 524 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 AC112945.1-201ENSMUST00000226413 514 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Usf1Q61069 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm15784-201ENSMUST00000120260 1462 ntBASIC10.85□□□□□ -0.67
Usf1Q61069 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
Usf1Q61069 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Usf1Q61069 Gm6655-201ENSMUST00000201932 1309 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Usf1Q61069 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Usf1Q61069 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Gm12030-201ENSMUST00000121917 223 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Gm9089-201ENSMUST00000122027 526 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Usf1Q61069 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC10.84□□□□□ -0.67
Usf1Q61069 Gm5706-201ENSMUST00000181525 993 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Gm4034-201ENSMUST00000187674 480 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Gm8574-201ENSMUST00000203207 924 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Gm44552-201ENSMUST00000205458 1247 ntBASIC10.84□□□□□ -0.67
Usf1Q61069 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Usf1Q61069 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 64 ms