Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC11.16□□□□□ -0.62
Trim40Q3UWA4 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm43931-201ENSMUST00000204817 2870 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm13492-201ENSMUST00000119772 665 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm15806-201ENSMUST00000120696 955 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm24644-201ENSMUST00000157114 139 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm4271-201ENSMUST00000174444 973 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm27847-201ENSMUST00000183711 107 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm27375-201ENSMUST00000183799 107 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Trim40Q3UWA4 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Trim40Q3UWA4 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Trim40Q3UWA4 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
Trim40Q3UWA4 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC11.15□□□□□ -0.63
Trim40Q3UWA4 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Trim40Q3UWA4 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Gm8228-201ENSMUST00000189949 2192 ntBASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Trim40Q3UWA4 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms