Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sox9Q04887 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sox9Q04887 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sox9Q04887 AC151895.1-201ENSMUST00000219025 1742 ntBASIC12.33□□□□□ -0.44
Sox9Q04887 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sox9Q04887 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Sox9Q04887 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Sox9Q04887 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sox9Q04887 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC12.32□□□□□ -0.44
Sox9Q04887 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sox9Q04887 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Sox9Q04887 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sox9Q04887 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC12.32□□□□□ -0.44
Sox9Q04887 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC12.32□□□□□ -0.44
Sox9Q04887 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Sox9Q04887 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm5419-201ENSMUST00000119301 527 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm12274-201ENSMUST00000120062 385 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm14034-201ENSMUST00000120147 551 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC12.32□□□□□ -0.44
Sox9Q04887 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
Sox9Q04887 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm26982-201ENSMUST00000182250 1151 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm38117-201ENSMUST00000194653 939 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm18561-201ENSMUST00000206027 804 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.32□□□□□ -0.44
Sox9Q04887 AC114645.1-201ENSMUST00000215831 187 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Olfr584-201ENSMUST00000098210 964 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Sox9Q04887 Pck2-205ENSMUST00000226352 2784 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm6831-202ENSMUST00000213025 1673 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sox9Q04887 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Gm18210-201ENSMUST00000209001 1524 ntBASIC12.32□□□□□ -0.44
Sox9Q04887 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC12.31□□□□□ -0.44
Sox9Q04887 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
Sox9Q04887 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Mir744-201ENSMUST00000103261 100 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Sox9Q04887 Gm5555-201ENSMUST00000120352 1111 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Gm14760-201ENSMUST00000121831 999 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.31□□□□□ -0.44
Sox9Q04887 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sox9Q04887 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC12.31□□□□□ -0.44
Sox9Q04887 Gm11942-201ENSMUST00000180255 345 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC12.31□□□□□ -0.44
Sox9Q04887 Gm28833-201ENSMUST00000189671 559 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Gm9136-201ENSMUST00000193368 454 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Gm8574-201ENSMUST00000203207 924 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 Gm7082-201ENSMUST00000209880 969 ntBASIC12.31□□□□□ -0.44
Sox9Q04887 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sox9Q04887 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sox9Q04887 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sox9Q04887 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sox9Q04887 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms