Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.58□□□□□ -0.4
Shmt1P50431 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Shmt1P50431 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Shmt1P50431 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.58□□□□□ -0.4
Shmt1P50431 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Shmt1P50431 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.57□□□□□ -0.4
Shmt1P50431 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.57□□□□□ -0.4
Shmt1P50431 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.57□□□□□ -0.4
Shmt1P50431 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Shmt1P50431 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Shmt1P50431 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.57□□□□□ -0.4
Shmt1P50431 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Shmt1P50431 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.57□□□□□ -0.4
Shmt1P50431 Gm19353-201ENSMUST00000184561 445 ntBASIC12.57□□□□□ -0.4
Shmt1P50431 Gm38117-201ENSMUST00000194653 939 ntBASIC12.57□□□□□ -0.4
Shmt1P50431 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC12.57□□□□□ -0.4
Shmt1P50431 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.57□□□□□ -0.4
Shmt1P50431 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Shmt1P50431 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Shmt1P50431 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Shmt1P50431 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Shmt1P50431 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.56□□□□□ -0.4
Shmt1P50431 Gm13045-201ENSMUST00000119019 712 ntBASIC12.56□□□□□ -0.4
Shmt1P50431 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.56□□□□□ -0.4
Shmt1P50431 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Shmt1P50431 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.56□□□□□ -0.4
Shmt1P50431 CT009718.3-201ENSMUST00000221116 367 ntBASIC12.56□□□□□ -0.4
Shmt1P50431 AC154680.1-201ENSMUST00000224376 859 ntBASIC12.56□□□□□ -0.4
Shmt1P50431 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.56□□□□□ -0.4
Shmt1P50431 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Shmt1P50431 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Shmt1P50431 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Shmt1P50431 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Shmt1P50431 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Shmt1P50431 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Shmt1P50431 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Shmt1P50431 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.55□□□□□ -0.4
Shmt1P50431 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Shmt1P50431 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms