Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Rfx1P48377 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Rfx1P48377 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Rfx1P48377 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Rfx1P48377 Gm12058-201ENSMUST00000118614 437 ntBASIC14.19□□□□□ -0.14
Rfx1P48377 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.19□□□□□ -0.14
Rfx1P48377 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.19□□□□□ -0.14
Rfx1P48377 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Rfx1P48377 Gm5706-201ENSMUST00000181525 993 ntBASIC14.19□□□□□ -0.14
Rfx1P48377 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC14.19□□□□□ -0.14
Rfx1P48377 Gm17931-201ENSMUST00000208132 634 ntBASIC14.19□□□□□ -0.14
Rfx1P48377 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Rfx1P48377 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Rfx1P48377 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rfx1P48377 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
Rfx1P48377 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rfx1P48377 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Gm8146-201ENSMUST00000192106 1847 ntBASIC14.18□□□□□ -0.14
Rfx1P48377 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Rfx1P48377 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC14.18□□□□□ -0.14
Rfx1P48377 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rfx1P48377 Gm13316-201ENSMUST00000140537 691 ntBASIC14.18□□□□□ -0.14
Rfx1P48377 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC14.18□□□□□ -0.14
Rfx1P48377 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC14.18□□□□□ -0.14
Rfx1P48377 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC14.18□□□□□ -0.14
Rfx1P48377 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rfx1P48377 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rfx1P48377 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rfx1P48377 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rfx1P48377 AC122811.1-201ENSMUST00000222257 2921 ntBASIC14.18□□□□□ -0.14
Rfx1P48377 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC14.17□□□□□ -0.14
Rfx1P48377 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC14.17□□□□□ -0.14
Rfx1P48377 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
Rfx1P48377 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Gm37348-201ENSMUST00000193104 1789 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Rfx1P48377 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC14.17□□□□□ -0.14
Rfx1P48377 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC14.17□□□□□ -0.14
Rfx1P48377 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Gm22119-201ENSMUST00000175594 99 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 AC166095.1-201ENSMUST00000223731 1241 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC14.17□□□□□ -0.14
Rfx1P48377 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC14.17□□□□□ -0.14
Rfx1P48377 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms