Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Cdx2P43241 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm6655-201ENSMUST00000201932 1309 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Cdx2P43241 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.31□□□□□ -0.6
Cdx2P43241 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Cdx2P43241 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC11.3□□□□□ -0.6
Cdx2P43241 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC11.3□□□□□ -0.6
Cdx2P43241 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Mir483-201ENSMUST00000093631 73 ntBASIC11.3□□□□□ -0.6
Cdx2P43241 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.3□□□□□ -0.6
Cdx2P43241 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdx2P43241 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx2P43241 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC11.29□□□□□ -0.6
Cdx2P43241 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Cdx2P43241 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm15615-201ENSMUST00000118876 198 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Gm11980-201ENSMUST00000121445 986 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Cdx2P43241 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm18059-201ENSMUST00000208073 580 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 CT030653.1-201ENSMUST00000224382 1279 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Ap3s1-202ENSMUST00000224622 978 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Gm25201-201ENSMUST00000083093 170 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Cdx2P43241 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC11.29□□□□□ -0.6
Cdx2P43241 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Cdx2P43241 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx2P43241 Gm45199-201ENSMUST00000207640 1507 ntBASIC11.29□□□□□ -0.6
Cdx2P43241 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms