Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC13.81□□□□□ -0.2
Traf1P39428 Mir1943-201ENSMUST00000158276 73 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Traf1P39428 Gm3508-201ENSMUST00000186012 792 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Gm10109-202ENSMUST00000206890 1211 ntBASIC13.81□□□□□ -0.2
Traf1P39428 AC134860.1-201ENSMUST00000224867 660 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Traf1P39428 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Gm44086-201ENSMUST00000203251 2349 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Gm9129-201ENSMUST00000218173 1689 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Traf1P39428 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Gm43447-201ENSMUST00000198471 1535 ntBASIC13.8□□□□□ -0.2
Traf1P39428 AC126257.1-201ENSMUST00000213195 1536 ntBASIC13.8□□□□□ -0.2
Traf1P39428 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Gm15004-201ENSMUST00000119192 630 ntBASIC13.8□□□□□ -0.2
Traf1P39428 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC13.8□□□□□ -0.2
Traf1P39428 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC13.8□□□□□ -0.2
Traf1P39428 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC13.8□□□□□ -0.2
Traf1P39428 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Traf1P39428 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Gm19287-201ENSMUST00000203190 358 ntBASIC13.8□□□□□ -0.2
Traf1P39428 Gm45909-201ENSMUST00000212413 1031 ntBASIC13.8□□□□□ -0.2
Traf1P39428 Gm14267-206ENSMUST00000226870 1209 ntBASIC13.8□□□□□ -0.2
Traf1P39428 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Ginm1-202ENSMUST00000065124 300 ntBASIC13.8□□□□□ -0.2
Traf1P39428 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Traf1P39428 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC13.8□□□□□ -0.2
Traf1P39428 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.8□□□□□ -0.2
Traf1P39428 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Traf1P39428 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Traf1P39428 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
Traf1P39428 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Traf1P39428 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
Traf1P39428 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Traf1P39428 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.79□□□□□ -0.2
Traf1P39428 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Gm13263-201ENSMUST00000121271 838 ntBASIC13.79□□□□□ -0.2
Traf1P39428 Gm8199-201ENSMUST00000121323 823 ntBASIC13.79□□□□□ -0.2
Traf1P39428 Gm8815-201ENSMUST00000173809 620 ntBASIC13.79□□□□□ -0.2
Traf1P39428 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC13.79□□□□□ -0.2
Traf1P39428 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC13.79□□□□□ -0.2
Traf1P39428 Gm10774-201ENSMUST00000188689 204 ntBASIC13.79□□□□□ -0.2
Traf1P39428 Gm37246-201ENSMUST00000192665 835 ntBASIC13.79□□□□□ -0.2
Traf1P39428 Gm9555-201ENSMUST00000200908 583 ntBASIC13.79□□□□□ -0.2
Traf1P39428 Gm45118-201ENSMUST00000208928 825 ntBASIC13.79□□□□□ -0.2
Traf1P39428 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Traf1P39428 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms