Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm14460-201ENSMUST00000121511 639 ntBASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm9387-201ENSMUST00000098624 1320 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm15566-201ENSMUST00000121130 590 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm45398-201ENSMUST00000210561 165 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Gm18974-201ENSMUST00000221478 1031 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 AC171241.1-201ENSMUST00000228144 1166 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.93□□□□□ -0.34
Trim54Q9ERP3 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.93□□□□□ -0.34
Trim54Q9ERP3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm15610-201ENSMUST00000120584 195 ntBASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Gm13263-201ENSMUST00000121271 838 ntBASIC12.92□□□□□ -0.34
Trim54Q9ERP3 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim54Q9ERP3 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 88.3 ms