Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm23153-201ENSMUST00000175323 313 ntBASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm38210-201ENSMUST00000191944 809 ntBASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm37981-201ENSMUST00000194280 535 ntBASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Gm2875-201ENSMUST00000211333 360 ntBASIC16.29■□□□□ 0.2
Usp40Q8BWR4 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 AC154257.1-202ENSMUST00000224729 843 ntBASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Mirlet7i-201ENSMUST00000083472 85 ntBASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Usp40Q8BWR4 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Gm13937-201ENSMUST00000121000 988 ntBASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC16.28■□□□□ 0.2
Usp40Q8BWR4 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 AC125108.1-201ENSMUST00000218986 2330 ntBASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Gm23272-201ENSMUST00000104053 129 ntBASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Mir6998-201ENSMUST00000183343 64 ntBASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp40Q8BWR4 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp40Q8BWR4 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms