Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Vps54Q5SPW0 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Gm19353-201ENSMUST00000184561 445 ntBASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps54Q5SPW0 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Gm13910-201ENSMUST00000121752 1428 ntBASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps54Q5SPW0 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm15207-201ENSMUST00000119259 442 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm11331-201ENSMUST00000119764 288 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm11941-201ENSMUST00000119904 610 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm23085-201ENSMUST00000157849 293 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Spcs1-203ENSMUST00000226374 592 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Gm1821-202ENSMUST00000227415 750 ntBASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps54Q5SPW0 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Vps54Q5SPW0 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms